TY - JOUR
T1 - Insights from the Biorepository and Integrative Genomics pediatric resource
AU - Regeneron Genetics Center
AU - Buonaiuto, Silvia
AU - Marsico, Franco
AU - Mohammed, Akram
AU - Chinthala, Lokesh K.
AU - Amos-Abanyie, Ernestine K.
AU - Siceron, Sunilbe
AU - Pagan, Michelle
AU - Rivera-Picart, Johannie
AU - Solari, Gina
AU - Perez-Beals, Ann
AU - Hart, Samuel
AU - Han, Anna
AU - Hankins, Jody
AU - Schwartz, Randi
AU - Hernandez, Jaimee
AU - Rana, Nadia
AU - Nishtala, Nirupama
AU - Rico-Varela, Jennifer
AU - Mighty, Jason
AU - LeBlanc, Michelle G.
AU - Chen, Esteban
AU - Paulding, Charles
AU - Lin, Nan
AU - Damask, Amy
AU - Choi, Sam
AU - Chen, Lei
AU - Sul, Jae Soon
AU - Zavala, Valentina
AU - Skead, Kimberly
AU - Revez, Joana
AU - Khiabanian, Hossein
AU - He, Jing
AU - Brown, Jessie
AU - Alvarez, Silvia
AU - Bras, Jose
AU - Guvenek, Aysegul
AU - Parikshak, Neelroop
AU - Otto, Jacqueline
AU - Kumar, Vijay
AU - Gelfman, Sahar
AU - Rajagopal, Veera
AU - Ayer, Ariane
AU - Alkelai, Anna
AU - Jallow, Momodou W.
AU - Tzoneva, Gannie
AU - Kapoor, Manav
AU - Riaz, Moeen
AU - Rodriguez-Flores, Juan
AU - Dornbos, Peter
AU - Finkel, Terri H.
N1 - © 2025. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.
PY - 2025/5/22
Y1 - 2025/5/22
N2 - The Biorepository and Integrative Genomics (BIG) Initiative in Tennessee has developed a pioneering resource to address gaps in genomic research by linking genomic, phenotypic, and environmental data from a diverse Mid-South population, including underrepresented groups. We analyzed 13,152 exomes from BIG and found significant genetic diversity, with 50% of participants inferred to have non-European or several types of admixed ancestry. Ancestry within the BIG cohort is stratified, with distinct geographic and demographic patterns, as African ancestry is more common in urban areas, while European ancestry is more common in suburban regions. We observe ancestry-specific rates of novel genetic variants, which are enriched for functional or clinical relevance. Disease prevalence analysis linked ancestry and environmental factors, showing higher odds ratios for asthma and obesity in minority groups, particularly in the urban area. Finally, we observe discrepancies between self-reported race and genetic ancestry, with related individuals self-identifying in differing racial categories. These findings underscore the limitations of race as a biomedical variable. BIG has proven to be an effective model for community-centered precision medicine. We integrated genomics education, and fostered great trust among the contributing communities. Future goals include cohort expansion, and enhanced genomic analysis, to ensure equitable healthcare outcomes.
AB - The Biorepository and Integrative Genomics (BIG) Initiative in Tennessee has developed a pioneering resource to address gaps in genomic research by linking genomic, phenotypic, and environmental data from a diverse Mid-South population, including underrepresented groups. We analyzed 13,152 exomes from BIG and found significant genetic diversity, with 50% of participants inferred to have non-European or several types of admixed ancestry. Ancestry within the BIG cohort is stratified, with distinct geographic and demographic patterns, as African ancestry is more common in urban areas, while European ancestry is more common in suburban regions. We observe ancestry-specific rates of novel genetic variants, which are enriched for functional or clinical relevance. Disease prevalence analysis linked ancestry and environmental factors, showing higher odds ratios for asthma and obesity in minority groups, particularly in the urban area. Finally, we observe discrepancies between self-reported race and genetic ancestry, with related individuals self-identifying in differing racial categories. These findings underscore the limitations of race as a biomedical variable. BIG has proven to be an effective model for community-centered precision medicine. We integrated genomics education, and fostered great trust among the contributing communities. Future goals include cohort expansion, and enhanced genomic analysis, to ensure equitable healthcare outcomes.
KW - Adolescent
KW - Child
KW - Female
KW - Humans
KW - Male
KW - Asthma/genetics
KW - Biological Specimen Banks
KW - Cohort Studies
KW - Genetic Variation
KW - Genomics/methods
KW - Racial Groups/genetics
KW - Tennessee/epidemiology
UR - https://www.scopus.com/pages/publications/105006000042
U2 - 10.1038/s41467-025-59375-0
DO - 10.1038/s41467-025-59375-0
M3 - Article
C2 - 40404628
AN - SCOPUS:105006000042
SN - 2041-1723
VL - 16
SP - 4750
JO - Nature Communications
JF - Nature Communications
IS - 1
M1 - 4750
ER -